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GEOfastq - Downloads ENA Fastqs With GEO Accessions

GEOfastq is used to download fastq files from the European Nucleotide Archive (ENA) starting with an accession from the Gene Expression Omnibus (GEO). To do this, sample metadata is retrieved from GEO and the Sequence Read Archive (SRA). SRA run accessions are then used to construct FTP and aspera download links for fastq files generated by the ENA.

Last updated

rnaseqdataimportbioinformaticsfastqgene-expressiongeorna-seq

4.85 score 5 stars 14 scripts 350 downloads

picker - Pick Data Points from a Deck.gl Scatterplot

Performant interactive scatterplot for ~ 1 million points. Zoom, pan, and pick points. Includes tooltips, labels, a grid overlay, legend, and coupled interactions across multiple plots.

Last updated

3.22 score 3 stars 11 scripts 267 downloads

shinypanel - Shiny Control Panel

Add shiny inputs with one or more inline buttons that grow and shrink with inputs. Also add tool tips to input buttons and styling and messages for input validation.

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shiny

3.00 score 2 stars 7 scripts 300 downloads

lydata - Example Dataset for crossmeta Package

Raw data downloaded from GEO for the compound LY294002. Raw data is from multiple platforms from Affymetrix and Illumina. This data is used to illustrate the cross-platform meta-analysis of microarray data using the crossmeta package.

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experimentdatamicroarraydatadatapkg

2.93 score 43 scripts

ccdata - Data for Combination Connectivity Mapping (ccmap) Package

This package contains microarray gene expression data generated from the Connectivity Map build 02 and LINCS l1000. The data are used by the ccmap package to find drugs and drug combinations to mimic or reverse a gene expression signature.

Last updated

experimentdatamicroarraydataexpressiondatadatapkg

2.84 score 23 scripts