GEOfastq - Downloads ENA Fastqs With GEO Accessions

GEOfastq is used to download fastq files from the European Nucleotide Archive (ENA) starting with an accession from the Gene Expression Omnibus (GEO). To do this, sample metadata is retrieved from GEO and the Sequence Read Archive (SRA). SRA run accessions are then used to construct FTP and aspera download links for fastq files generated by the ENA.

Last updated 4 months ago

rnaseqdataimportbioinformaticsfastqgene-expressiongeorna-seq

4.60 score 4 stars 6 scripts 260 downloads

shinydlplot - Add a Download Button to a 'shiny' Plot or 'plotly'

Add a download button to a 'shiny' plot or 'plotly' that appears when the plot is hovered. A tooltip, styled to resemble 'plotly' buttons, is displayed on hover of the download button. The download button can be used to allow users to download the dataset used for a plot.

Last updated 2 years ago

ggplot2plotlyshiny

3.65 score 9 stars 7 scripts 264 downloads

picker - Pick Data Points from a Deck.gl Scatterplot

Performant interactive scatterplot for ~ 1 million points. Zoom, pan, and pick points. Includes tooltips, labels, a grid overlay, legend, and coupled interactions across multiple plots.

Last updated 3 years ago

3.22 score 3 stars 11 scripts 216 downloads

ccmap - Combination Connectivity Mapping

Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles.

Last updated 4 months ago

geneexpressiontranscriptionmicroarraydifferentialexpression

3.00 score 5 scripts 240 downloads

shinypanel - Shiny Control Panel

Add shiny inputs with one or more inline buttons that grow and shrink with inputs. Also add tool tips to input buttons and styling and messages for input validation.

Last updated 3 years ago

shiny

3.00 score 2 stars 7 scripts 238 downloads